Dileep Kishore
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About me

Dileep Kishore

Hi, I'm Dileep Kishore!

  • Postdoctoral Research Associate
  • Microbiome researcher
  • Open-source enthusiast
  • Bioinformatics, AI, algorithms, and quantified-self

I currently work at the Oak Ridge National Laboratory in the Computational and Predictive Biology group as a Postdoctoral Research Associate. I work on understanding microbial interactions in the plant microbiome and towards design synthetic predictable and stable microbial communities.

Education

  • Oak Ridge National Laboratory, USA. Postdoctoral Research Associate. 2023-present.
  • Boston University Boston, USA. Postdoctoral Fellow. 2023-present.
  • Boston University Boston, USA. Ph.D. in Bioinformatics. 2016-2022.
  • Indian Institute of Technology - Madras Chennai, India. B.Tech (Honors) and M.Tech (Dual Degree) in Biotechnology. 2011-2016.

Publications

  • Kishore, Dileep; Birzu, Gabriel; Hu, Zhenjun; DeLisi, Charles; Korolev, Kirill S; Segrè, Daniel; . Inferring microbial co-occurrence networks from amplicon data: a systematic evaluation. Msystems. 2023.
  • Pacheco, Alan R; Pauvert, Charlie; Kishore, Dileep; Segrè, Daniel; . Toward FAIR Representations of Microbial Interactions. Msystems. 2022.
  • Kishore, Dileep; Chandrasekaran, Srikiran; . Introducing and benchmarking the accuracy of cayenne: a Python package for stochastic simulations. bioRxiv. 2020.
  • Hu, Zhenjun; Kishore, Dileep; Wang, Yan; Birzu, Gabriel; DeLisi, Charles; Korolev, Kirill S; Segre, Daniel; . A resource for the comparison and integration of heterogeneous microbiome networks. bioRxiv. 2022.
  • Kishore, Dileep; Birzu, Gabriel; Hu, Zhenjun; DeLisi, Charles; Korolev, Kirill S; Segrè, Daniel; . Inferring microbial co-occurrence networks from amplicon data: a systematic evaluation. bioRxiv. 2020.
  • Federico, Anthony; Karagiannis, Tanya; Karri, Kritika; Kishore, Dileep; Koga, Yusuke; Campbell, Joshua D; Monti, Stefano; . Pipeliner: A Nextflow-based framework for the definition of sequencing data processing pipelines. Frontiers in genetics. 2019.